Cream Cheese Cupcakes

There’s something about peeling back a cupcake liner and seeing a swirl of creamy, pale ivory filling tucked inside golden, tender cake.

These cream cheese cupcakes are a cozy dessert that feels bakery-fancy but comes together surprisingly fast—perfect for nights when you need something sweet without an all-day project.

They’re ideal for beginners, busy families, and anyone with a serious sweet tooth.

I still remember a rainy Tuesday when friends dropped by unannounced; I threw these together while we chatted at the kitchen counter.

By the time coffee finished brewing, the kitchen smelled like warm vanilla and sugar, and a tray of slightly warm cupcakes became the centerpiece of an impromptu get-together.

These shine at birthday parties, easy entertaining, or whenever a last-minute craving hits and you’d rather bake than run to the store.

Ready to bring this dish to life?

Why You’ll Love It

  • Delivers rich vanilla cake with a luscious, tangy cream cheese center
  • Feels fancy yet uses simple, everyday baking ingredients and tools
  • Bakes into perfectly portioned, grab-and-go individual desserts for gatherings
  • Stays moist and tender, even after chilling in the refrigerator
  • Offers make-ahead convenience; prepare, chill, then serve at room temperature

Ingredients

  • 1 1/2 cups all-purpose flour — measure with spoon-and-level for accuracy
  • 1 1/2 teaspoons baking powder — guarantees a light, fluffy rise
  • 1/4 teaspoon fine salt — enhances overall flavor balance
  • 1/2 cup unsalted butter, softened — room temperature for easy creaming
  • 3/4 cup granulated sugar — beat well with butter for airy texture
  • 2 large eggs, room temperature — incorporate better and prevent curdling
  • 1 teaspoon vanilla extract — use pure vanilla for best flavor
  • 1/2 cup whole milk, room temperature — keeps batter smooth and tender
  • 8 ounces cream cheese, softened — full-fat for the creamiest center
  • 1/4 cup granulated sugar (for cream cheese filling) — lightly sweetens the filling
  • 1 teaspoon vanilla extract (for cream cheese filling) — adds warm, dessert-like aroma
  • 1 large egg yolk (for cream cheese filling) — enriches and thickens the filling

Step-by-Step Method

Preheat & Prepare Pan

Preheat the oven to 350°F (175°C). Line a standard 12-cup muffin tin with paper cupcake liners, pressing each firmly into the cups.

Clear your workspace and gather all ingredients and equipment. Make certain the butter, cream cheese, eggs, and milk are at room temperature so they blend smoothly and help create a tender cupcake texture.

Combine Dry Ingredients

Measure the all-purpose flour, baking powder, and fine salt into a medium mixing bowl. Whisk thoroughly to blend and break up any lumps.

Distribute the baking powder evenly through the flour so the cupcakes rise uniformly. Set this dry mixture aside, keeping it nearby for when you combine it with the wet ingredients later.

Cream Butter & Sugar

Place the softened unsalted butter and 3/4 cup granulated sugar in a large mixing bowl. Beat with an electric mixer on medium speed until the mixture becomes light, fluffy, and slightly paler in color.

Scrape down the sides of the bowl as needed. Proper creaming incorporates air, helping the cupcakes bake up soft and tender.

Add Eggs & Vanilla

Crack the two large eggs into a small bowl to check for shells, then add them to the butter mixture one at a time. Beat well after each addition until fully incorporated.

Mix in 1 teaspoon vanilla extract until evenly combined. Scrape the bowl again to make certain no streaks of egg or butter remain before adding the dry ingredients.

Alternate Dry Mix & Milk

Add half of the flour mixture to the butter mixture and mix on low speed just until combined. Pour in half of the room-temperature milk and mix briefly.

Repeat with the remaining flour and milk. Stir only until the batter is smooth. Avoid overmixing at this stage to prevent developing gluten, which can make the cupcakes dense.

Beat Cream Cheese Filling

In a separate medium bowl, add the softened cream cheese, 1/4 cup granulated sugar, 1 teaspoon vanilla extract, and the egg yolk. Beat with a clean mixer on medium speed until completely smooth and creamy.

Scrape the sides and bottom of the bowl so no lumps remain. The filling should be pourable yet thick enough to stay centered in the batter.

Fill Liners with Batter Base

Using an ice cream scoop or large spoon, portion cupcake batter into the prepared liners, filling each about one-third full. Spread the batter gently so it covers the bottom evenly.

Keep the batter level and avoid smearing it high up the paper sides, which helps the cream cheese filling stay centered and reduces sticking to the liners.

Add Cream Cheese Centers

Spoon about 1 tablespoon of the cream cheese mixture into the center of each partially filled cupcake. Keep the filling slightly away from the liner edges so it remains contained within the batter as it bakes.

Work evenly across all cups to make certain each cupcake gets a similar amount of creamy, tangy filling inside.

Cover & Top Off Liners

Scoop additional cupcake batter over the cream cheese centers, covering them completely. Fill each liner until it’s about two-thirds full, leaving room for the cupcakes to rise without overflowing.

Smooth the tops gently with a spoon if needed. Make certain no cream cheese is exposed on the surface to prevent excessive browning or cracking.

Bake & Test Doneness

Place the muffin tin in the preheated oven on the center rack. Bake for 16–18 minutes, rotating the pan once if your oven heats unevenly.

Check doneness by inserting a toothpick into the cake portion, avoiding the cream cheese center. The toothpick should come out clean or with a few moist crumbs, not wet batter.

Cool in Pan Briefly

Remove the tin from the oven and set it on a cooling rack. Let the cupcakes cool in the pan for about 5 minutes.

This brief rest helps them firm up enough to handle without collapsing. Avoid leaving them in the hot pan too long, which can cause the bottoms to become soggy from trapped steam.

Transfer & Cool Completely

Carefully lift each cupcake from the tin and place it directly on the cooling rack. Allow them to cool completely for at least 25 minutes so the cream cheese filling sets properly.

Resist cutting or unwrapping too soon. Once fully cooled, serve at room temperature or refrigerate, then bring back to room temperature before enjoying.

Ingredient Swaps

  • Use full-fat block cream cheese for best texture; Neufchâtel works, but the centers will be slightly softer.
  • Substitute an equal amount of plain yogurt or sour cream for up to half of the milk for extra tang and moisture.
  • For dairy-free: use vegan butter, plant-based cream cheese, and nondairy milk; note texture will be a bit softer.
  • For gluten-free: swap the all-purpose flour 1:1 with a good gluten-free baking blend that contains xanthan gum.

You Must Know

Flavor Boost – To deepen flavor without extra sweetness, add 1/4–1/2 teaspoon almond extract or 1 teaspoon lemon zest to either the batter or cream cheese filling; you’ll taste a noticeable lift even in one test cupcake.

Serving Tips

  • Dust cooled cupcakes with powdered sugar and garnish with fresh berries on top.
  • Serve alongside hot coffee, black tea, or a glass of cold milk.
  • Plate with a drizzle of raspberry or chocolate sauce under each cupcake.
  • Add a dollop of whipped cream and sprinkle with crushed graham crackers.
  • Arrange on a tiered stand for parties, alternating with fruit or chocolate cupcakes.

Storage & Make-Ahead

Cream cheese cupcakes keep covered in the refrigerator for up to 4 days; let them come to room temperature before serving for the best texture.

They’re great make-ahead desserts—bake, cool completely, then chill.

You can also freeze them (well-wrapped) for up to 2 months; thaw overnight in the fridge.

Reheating

For best texture, reheat chilled cream cheese cupcakes gently: 10–15 seconds in the microwave, or 5–8 minutes in a 300°F (150°C) oven.

Avoid stovetop reheating to prevent uneven warming.

Bake Sale Nostalgia

Somewhere between the smell of floor wax and poster paint, I can still picture the bake sale table sagging under plastic-wrapped treats, and those cream cheese cupcakes always stealing the spotlight.

The gym buzzed with kids waving dollar bills, but I only had eyes for that crinkly-wrapped dozen—little golden tops hiding cool, creamy centers.

My friend’s mom baked them back then; now it’s my turn. When I bring a batch to any fundraiser, I still stack them in slightly uneven rows, like those wobbly card tables at school.

You take a bite and the memories rush in: glitter stuck to your sleeves, announcements echoing off the walls, and that sweet, tangy pocket of cream cheese that always felt like a secret just for you.

Final Thoughts

Give these cream cheese cupcakes a try and enjoy the rich, creamy centers tucked inside soft, fluffy cake.

Feel free to put your own spin on them with different extracts, citrus zest, or your favorite toppings to make them truly yours.

Frequently Asked Questions

Can I Make These Cream Cheese Cupcakes Gluten-Free Without Compromising Texture?

Yes, you can, and they’ll still taste dreamy. I swap the flour for a 1:1 gluten‑free blend with xanthan gum, sift it well, and gently fold; friends never notice—I just watch crumbs disappear.

How Do I Scale This Recipe for a Large Party or Catering Event?

You’ll scale it by multiplying every ingredient by your desired batch number—I often triple it for parties, baking in rounds. I keep one bowl mixing while another bakes, so the kitchen hums like a tiny bakery.

What’s the Best Way to Ship These Cupcakes Without Ruining the Filling?

I chill them rock-cold overnight, then snug each one in a cupcake insert box, wrapped in bubble-lined insulation with frozen gel packs, and ship overnight—like sending tiny frosted treasures in their own private snowstorm.

Can I Safely Freeze the Raw Batter and Cream Cheese Filling for Later Baking?

Yes, you can, but I wouldn’t. I’ve frozen similar batters before; they baked up uneven and slightly rubbery. Instead, I’d bake now, freeze the fully cooled cupcakes, then thaw and serve later.

How Can I Adjust This Recipe for High-Altitude Baking Conditions?

You’ll reduce leavening slightly, add 1–2 tablespoons extra milk, and bake hotter, shorter. I do this at 6,000 feet—crumb stays tender, centers don’t sink, and your kitchen smells like a cozy mountain bakery.

rich creamy dessert cupcakes

Cream Cheese Cupcakes

Prep Time 20 minutes
Cook Time 18 minutes
Resting Time 30 minutes
Total Time 1 hour 8 minutes
Course Dessert
Cuisine American
Servings 12 cupcakes

Equipment

  • 1 standard 12-cup muffin tin
  • 12 paper cupcake liners
  • 2 medium mixing bowls
  • 1 large mixing bowl
  • 1 electric mixer or stand mixer
  • 2 rubber spatulas
  • 1 Whisk
  • 1 Measuring cups set
  • 1 Measuring spoons set
  • 1 Cooling rack
  • 1 Ice cream scoop or large spoon

Ingredients
  

  • 1 1/2 cup all-purpose flour
  • 1 1/2 teaspoon baking powder
  • 1/4 teaspoon fine salt
  • 1/2 cup unsalted butter softened
  • 3/4 cup granulated sugar
  • 2 large eggs room temperature
  • 1 teaspoon vanilla extract
  • 1/2 cup whole milk room temperature
  • 8 ounce cream cheese softened
  • 1/4 cup granulated sugar for cream cheese filling
  • 1 teaspoon vanilla extract for cream cheese filling
  • 1 large egg yolk for cream cheese filling

Instructions
 

  • Preheat the oven to 350°F (175°C) and line the muffin tin with paper cupcake liners.
  • In a medium bowl whisk together the flour, baking powder, and salt.
  • In a large bowl beat the softened butter and 3/4 cup sugar with an electric mixer until light and fluffy.
  • Beat in the 2 whole eggs one at a time, then mix in 1 teaspoon vanilla until combined.
  • Add the dry ingredients to the butter mixture in two additions, alternating with the milk, mixing just until smooth.
  • In another medium bowl beat the cream cheese, 1/4 cup sugar, 1 teaspoon vanilla, and egg yolk until smooth and creamy.
  • Fill each cupcake liner about one-third full with the cupcake batter.
  • Spoon about 1 tablespoon of the cream cheese mixture into the center of each cupcake.
  • Cover the cream cheese filling with a little more batter until the liners are about two-thirds full.
  • Bake the cupcakes for 16–18 minutes or until the tops are set and a toothpick inserted into the cake portion comes out clean.
  • Let the cupcakes cool in the pan for 5 minutes, then transfer them to a cooling rack to cool completely for at least 25 minutes.

Notes

For best results make sure both the butter and cream cheese are fully softened so they whip smoothly and create a tender crumb and creamy center, avoid overmixing once the flour is added to prevent dense cupcakes, and keep the cream cheese filling slightly away from the paper edges to minimize sticking; these cupcakes taste best fully cooled as the filling firms up, and they can be stored covered in the refrigerator for up to 4 days, then brought to room temperature before serving.
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